Friday, September 10, 2010This is kind of stupid, but I thought I'd share a video of my new lab fish. Who knows if they'll survive quarantine, but we can bask in their beauty for a while.
The blue-ish one is a powder blue tang approximately 3" long and the yellow one is one of my favorite fish of all time! It's a yellow long nose butterfly fish. The tang is covered in a pretty common parasite so they have to stay in quarantine for a few weeks. The treatment regimen is to lower the salinity by 70% and then let the fish hang out in that for 4 weeks. Amazingly, saltwater fish can survive in very low salinity water, the parasite can't and eventually dies out as all of the eggs hatch. Although, the unfortunate thing is that salinity can be reduce drastically over a one hour period, but the salinity must be raised back up to normal much much more slowly. It usually takes a week and a half to bring the quarantine tank's salinity back up without killing the fish. I'm sure there's some interesting physiology involved there ;) So maybe in 6 weeks I'll post another video of these guys swimming in the main tank!
Hi Brian, I am certainly interested in both continuity and accuracy of PacBio sequencing. However, I no longer fear the 15% error rate like I first did, because we have more-or-less worked . . .Read More
Great stuff Jeremy! You bring up good points about gaps and bioinformatics. Despite the advances in technology, there is a lot of extra work that goes into assembling a de novo genome on the ba. . .Read More
Brian,I don't know why shatz doesn't appear to be concerned about the accuracy of Pacbio for plant applications. You would have to ask him. We operate in different spaces- shatz is concerned a. . .Read More
Hey Jeremy, thanks for the clarification! I really enjoyed your talk and seeing Moleculo in action. I just wish we knew more details about how it worked. One question though, why do you think. . .Read More
Hey Brian- good post, I don't like Moleculo because they do the work (i dont have problem reconstructing sub assemblies of millions of reads:) although many people do appreciate the ease of data colle. . .Read More